{"id":"d1059444-14f0-4e21-89f0-37dea83bf7c6","slug":"contextsc","kind":"mcp","name":"contextsc","summary":"scverse context for agentic coding","owner":"giovp","repoUrl":"https://github.com/giovp/contextsc","license":"BSD-3-Clause","licenseTier":"permissive","trust":"community","stars":3,"match":null,"fewStars":true,"format":"mcp","createdAt":"2025-10-05T22:18:30.000Z","addedAt":"2026-10-21T16:02:07.049Z","logoUrl":"https://avatars.githubusercontent.com/u/25887487?u=3a56ce4a09347dcbdc176c9b7ab03ed2363648e9&v=4","linkOnly":false,"collection":null,"skillPath":null,"categories":["memory-knowledge"],"tags":[],"runtime":"binary","local":true,"cloudCapable":false,"cloudCapability":"unknown","cloudReadyOnPlatform":false,"needsApiKey":false,"reviewed":false,"syncedAt":"2026-10-23T00:42:02.662Z","sample":false,"url":"https://conduits.dev/tools/contextsc","language":"Python","transports":["stdio"],"install":{},"requirements":{"env":[],"upstreamMayCharge":false},"tools":null,"readme":"# contextsc\n\n[![BioContextAI - Registry](https://img.shields.io/badge/Registry-package?style=flat&label=BioContextAI&labelColor=%23fff&color=%233555a1&link=https%3A%2F%2Fbiocontext.ai%2Fregistry)](https://biocontext.ai/registry)\n[![Tests][badge-tests]][tests]\n[![Documentation][badge-docs]][documentation]\n\n[badge-tests]: https://img.shields.io/github/actions/workflow/status/giovp/contextsc/test.yaml?branch=main\n[badge-docs]: https://img.shields.io/readthedocs/contextsc\n\nBioContextAI MCP server for scverse ecosystem documentation. Provides version-specific documentation and code examples for scanpy, anndata, mudata, squidpy, and other scverse packages.\n\n## Getting started\n\nPlease refer to the [documentation][],\nin particular, the [API documentation][].\n\nYou can also find the project on [BioContextAI](https://biocontext.ai), the community-hub for biomedical MCP servers: [contextsc on BioContextAI](https://biocontext.ai/registry/giovp/contextsc).\n\n## Installation\n\nYou need to have Python 3.11 or newer installed on your system.\nIf you don't have Python installed, we recommend installing [uv][].\n\nThere are several alternative options to install contextsc:\n\n1. Use `uvx` to run it immediately:\n\n```bash\nuvx contextsc\n```\n\n2. Include it in one of various clients that supports the `mcp.json` standard, please use:\n\n```json\n{\n  \"mcpServers\": {\n    \"server-name\": {\n      \"command\": \"uvx\",\n      \"args\": [\"contextsc\"],\n      \"env\": {\n        \"UV_PYTHON\": \"3.12\" // or required version\n      }\n    }\n  }\n}\n```\n\n3. Install it with `uv`:\n\n```bash\nuv pip install contextsc\n```\n\n4. Install it through `pip`:\n\n```bash\npip install contextsc\n```\n\n5. Install the latest development version:\n\n```bash\nuv pip install git+https://github.com/giovp/contextsc.git@main\n```\n\n## Contact\n\nIf you found a bug, please use the [issue tracker][].\n\n## Citation\n\n> t.b.a\n\n[uv]: https://github.com/astral-sh/uv\n[issue tracker]: https://github.com/giovp/contextsc/issues\n[tests]: https://github.com/giovp/contextsc/actions/workflows/test.yaml\n[documentation]: https://contextsc.readthedocs.io\n[changelog]: https://contextsc.readthedocs.io/en/latest/changelog.html\n[api documentation]: https://contextsc.readthedocs.io/en/latest/api.html\n[pypi]: https://pypi.org/project/contextsc\n"}