mcp server

contextsc

scverse context for agentic coding

giovp/contextsccommunitylistedunreviewed

Use tool

Set up

Runs on your computer. Pick your agent and operating system.

This project does not publish an install method we can turn into a config. Follow the README instead.

README

synced Oct 23, 2026

contextsc

BioContextAI MCP server for scverse ecosystem documentation. Provides version-specific documentation and code examples for scanpy, anndata, mudata, squidpy, and other scverse packages.

Getting started

Please refer to the documentation, in particular, the API documentation.

You can also find the project on BioContextAI, the community-hub for biomedical MCP servers: contextsc on BioContextAI.

Installation

You need to have Python 3.11 or newer installed on your system. If you don't have Python installed, we recommend installing uv.

There are several alternative options to install contextsc:

Use uvx to run it immediately:

uvx contextsc

Include it in one of various clients that supports the mcp.json standard, please use:

{
  "mcpServers": {
    "server-name": {
      "command": "uvx",
      "args": ["contextsc"],
      "env": {
        "UV_PYTHON": "3.12" // or required version
      }
    }
  }
}

Install it with uv:

uv pip install contextsc

Install it through pip:

pip install contextsc

Install the latest development version:

uv pip install git+https://github.com/giovp/contextsc.git@main

Contact

If you found a bug, please use the issue tracker.

Citation

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