skill

agent-skills

This repository contains agent skills that are leveraged across Sage Bionetworks

Set up

Skills are installed by placing their folder where your agent loads skills.

The download comes from github.com/Sage-Bionetworks/agent-skills itself, not from our server, so what you get is exactly what its author published.

Install instructions come from the README

Skills do not use an MCP config. Follow the steps in the README below.

synced Oct 25, 2026

A collection of agent skills for Sage Bionetworks — data science, bioinformatics, and research tooling for use with Claude Code.

/plugin marketplace add Sage-Bionetworks/agent-skills
/plugin install agent-skills

Skill	Description	Category
synapse-python-client	Interact with Synapse (synapse.org) for biomedical data sharing using the modern Python client	Bioinformatics
nih-reporter	Query the NIH RePORTER API (projects + publications) — payload construction, pagination, rate-limit handling, and the criteria↔include↔response field-name mapping	Research
synapse-data-curation	Advanced Synapse REST API patterns for data curation: annotations2 etag handling, Dataset entity creation with dynamic columns, JSON Schema binding, and wiki management	Bioinformatics
scientific-metadata-extraction	Extract and normalize scientific dataset metadata from GEO, SRA/ENA, PubMed, and BioSample: per-sample ID derivation, author normalization, assay type determination, and a 4-tier gap-fill strategy	Bioinformatics
bootstrap-claudemd	Generate a new CLAUDE.md from scratch by exploring a codebase	Developer Tools
evolve-claudemd	Update existing CLAUDE.md files by analyzing code changes and auditing accuracy	Developer Tools
pull-request-description	Draft PR titles and descriptions that follow the repo's pull request template and pull context from the branch's Jira ticket, scaled to the size of the change	Developer Tools

Want to add a skill? See CONTRIBUTING.md.