MCP servers and skills: search, filter by where they run, and compare.
1–24 of 33 tools for “gene-expression”
Clear allGTEx — Genotype-Tissue Expression human gene-expression atlas
Hosted by authorMITFew starsNo key
A Model Context Protocol (MCP) server for querying Neo4j Graph Databases with customized tools to query the NASA GeneLab Knowledge Graph
PythonBSD-3-Clause★ 5No key
Model Context Protocol server for NCI Genomic Data Commons - enabling AI agents to query and download cancer genomic data
SkillMIT★ 1Few starsNo key
Query gene specificity in the founder mouse strains
SkillBSD-2-Clause★ 2Few starsNo key
MCP server for the GTEx Portal: tissue-specific gene expression — median and per-sample TPM, top expressed genes per tissue, and gene/transcript annotation — as typed tools for LLM agents.
PythonMITFew starsNo key
Gene expression experiments and the brain structure ontology from the Allen Institute's Brain Atlas — where in the brain a gene is expressed.
Hosted by authorMITFew starsNo key
MCP server that lets AI assistants (Claude, Cursor, Copilot) run GenePattern bioinformatics modules, manage cloud jobs, and access genomic data — all through natural language.
SkillBSD-3-Clause★ 2Few starsNo key
🌱 AgriClaw — Agriculture-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
SkillMIT★ 2Few starsNo key
Agent skill and CLI toolkit for querying, analyzing, and visualizing human RNA expression baselines and cis-eQTL regulatory associations from the GTEx Portal API V2 across 54 tissues into standalone i
SkillApache-2.0Few starsNo key
NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)
Hosted by authorMITFew starsNo key
An statistical agent that drives [BRIER](https://github.com/UM-KevinHe/BRIER), transfer-learning genetic risk prediction, through natural language.
SkillGPL-3.0★ 3Few starsNo key
To discover gene expression datasets by disease/condition and access comprehensive NCBI databases
MCPLink only★ 2Few stars
🧬 A comprehensive MCP server for bioinformatics — 62 tools for genomics, transcriptomics, epigenetics & more. Connects AI agents to scanpy, biopython, squidpy, NCBI, UniProt, Ensembl, and PubMed.
PythonMIT★ 1Few starsNo key
Biomedical research agent with 28 MCP tools powered by MedGemma, TxGemma and OpenCode
SkillMIT★ 17No key
Screen gene lists for cell-type-specific expression using Human Protein Atlas single-cell RNA-seq (154 cell types, nCPM) and tissue RNA (51 tissues, nTPM); outputs ranked results, Excel/TSV reports, a
SkillMIT★ 2Few starsNo key
Biomedical evidence retrieval and public-study analysis through MCP, Python and a JSON CLI.
PythonApache-2.0★ 1Few starsNo key
dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI Variation Services.
Hosted by authorMITFew starsNo key
Who stands behind it
